intel-analytics#5605)

* Enable FL Server in SGX (#5396)

* add assembly

* Enable FL Sever in SGX

* Change the url in tutorial.md

* Add start-fl-server.py to Docker Image

* rm ppml-assebly.xml

* Add start-python-fl-server-sgx.sh to Docker Image

* Put start-fl-server.py into assembly

* Update 3.1.2 Start FL Server in SGX in pytorch-nn-lr-tutorial.md

* Change the location of start-fl-server.py

* Correct the path in start-python-fl-server-sgx.sh

* Delete -r in cp command

Co-authored-by: Jiaming <[email protected]>

* fix tf inc metric format (#5127)

* fix tf inc metric format

* re-run actions

* Apply suggestions from code review

Co-authored-by: Zhentao Chen <[email protected]>

* Update

Co-authored-by: Zhentao Chen <[email protected]>

* Orca: update known-issues. (#5505)

* fix: update known-issues.

* fix: fix wording.

* Chronos: update js, css and md files to add filter function in tutorial page. (#5506)

* Chronos: PR validation job to Github action (#5349)

Migrate current jenkins CI/CD jobs to github action, this is chronos PR validation-Spark2.4-ray job

* Chronos: an error message is added to AutoformerForecaster.predict() (#5483)

When the input data to AutoformerForecaster.predict() is incorrect, the error message is confusing. Thus, a new error message is added.

* [Nano] Openvino quantization notebooks with nano (#5491)

* notebook with nano

* load with nano

* modify readme

* clear all outputs and enable benchmark_app

* fix typo

* Correct the path of start-fl-server.py in assembly.xml (#5509)

* add assembly

* Enable FL Sever in SGX

* Add start-fl-server.py to Docker Image

* rm ppml-assebly.xml

* Add start-python-fl-server-sgx.sh to Docker Image

* Put start-fl-server.py into assembly

Co-authored-by: Jiaming <[email protected]>

* fix compile issue for spark2.3 (#5501)

* Nano: update ipex_bf16_inference_model (#5470)

* rollback requirement-doc

* Update

* Update

* Update

* Update

* Fix ipex with amp error

* Fix unit test

* Update

* Remove redundant method

* Fix error

* remove redundant import

* Update ut to conver cases

* Fix the problem of cannot find the directory. (#5518)

* add assembly

* Enable FL Sever in SGX

* Add start-fl-server.py to Docker Image

* rm ppml-assebly.xml

* Add start-python-fl-server-sgx.sh to Docker Image

* Put start-fl-server.py into assembly

* Fix the target directory

Co-authored-by: Jiaming <[email protected]>

* [Orca] Replace pyarrow dependency in tf2 ray estimator (#5465)

* remove pyarrow dependency in tf2 ray backend

* update ut to compare prediction results

* CICD: re-organize existing workflows into two workflows: nightly_build and nightly_test (#5511)

* reorg workflows
* remove duplicate yamls
* add dependencies

* PPML add pytorch incremental training and tutorial (#5379)

* Orca: add save and load model doc to PyTorch Estimator quick-start. (#5504)

* feat: add save and load model doc to pytorch estimator quickstart.

* fix: fix typo.

* fix: fix typo

* fix: fix typo.

* feat: add doc to ray backend quickstart

* fix: fix typo.

* feat: add doc to ray backend quickstart

* Orca: add shutdown API to tf2 pyspark estimator. (#5499)

* feat: add shutdown API to tf2 pyspark estimator.

* fix: replace raise with log4Error.

* refactor: refactor the stop log server function.

* fix: fix code style issue.

* update nightly Scala build (#5523)

* Orca: refactor HDFS operation in estimator (#5325)

* fix: use default value if no hdfs port specified.

* fix: add default hdfs port when saving pkl

* refactor: replace pyarrow deps in estimator.

* fix: add process wait()

* fix: resolve unnecessary change

* Update nano training ipex bf16 (#5333)

* Update

* Fix code style

* re-run action

* Fix code style

* re-run action

* Update

* Fix code style

* support bf16 multi training

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* reduce ut time and re-run action

* track avx512

* Update lite bf16 training

* Update

* Update

* Update bf16 api

* Update

* Fix typo

* Orca: add get remote file to local decorator in orca file utils. (#5508)

* feat: add get remote file to local decorator in orca file utils.

* feat: add unit-test for local and s3 FS.

* fix: update func name and comments.

* fix: fix code style.

* fix: fix code style.

* fix: fix typo.

* fix: fix import.

* PPML FL add PSI support for fl nn server (#5434)

* [Orca] Refactor tf2 pyspark estimator save model (#5425)

* fix save model in pyspark est

* use a function to replace

* use orca.data to replace dllib

* Add Xshards test to github actions (#5512)

* Add Xshards test to github actions

* add file path

* fix yml

* fix csv path

* fix csv path

* fix yml

* add wget

* fic typo

* fix typo

* change csv file path

* update pwd

* add new line

* delete a line

* add time

Co-authored-by: yansu <[email protected]>

* Update some packages' edition (#5527)

* add assembly

* Enable FL Sever in SGX

* Add start-fl-server.py to Docker Image

* rm ppml-assebly.xml

* Add start-python-fl-server-sgx.sh to Docker Image

* Put start-fl-server.py into assembly

* Change some packages' edition

* Fix the problem of fl/start-fl-server.py

Co-authored-by: Jiaming <[email protected]>

* Use tracker.py to build xgboost4j_2.12-1.1.2.jar (#5513)

Reason to change: tracker.py in ${BIGDL_HOME}/jars/bigdl-dllib-spark_${SPARK_VERSION}-${BIGDL_VERSION}.jar is not functional.

Instead of using tracker.py to build ${BIGDL_HOME}/jars/bigdl-dllib-spark_${SPARK_VERSION}-${BIGDL_VERSION}.jar,
we now use it to build xgboost4j_2.12-1.1.2.jar, which can be reached when executing xgboost examples.

* Create nightly-build-example-tests-ppml.yaml (#5517)

* Create nightly-build-example-tests-ppml.yaml

* Update nightly-build-example-tests-ppml.yaml

Triggered by schedule

* Update nightly-build-example-tests-ppml.yaml

* Chronos: add tune for lstm and s2s (#5521)

* set use_hpo=True and add ut

* PPML: add k8s to Gramine Docker (#5428)

* feat: add k8s related files

* fix: change secure-argv to secure_argv in Gramine

* fix: check if secured_argv exists with -f

* fix: exit when not ready in init.sh

* fix: change path of encalve-key in k8s template

* feat: copy k8s directory to Gramine directory

* mod: version in development

* mod: enclave-key path

* del: remove tmp build action

* feat: Simplify deployment operations for users

* doc: update README.md

* doc: correct a typo

* doc: correct typo

* add spark pi on k8s scripts

* ppml python psi hashing (#5531)

* cicd: refactor the github actions workflows (#5529)

* add composite actions

* add manually build

* Nano: Enhance optimizer pipeline (#5490)

* refactor code

* enable get_best_model

* basic impl finnish

* add license

* clean openvino output

* remove one line

* remove partial output of openvino and inc

* add trace and quantize

* update based on comments

* ingore errors

* update based on comment

* update based on comment

* add type hint for return

* fix issues (#5539)

* Chronos: set kernel of Autoformer to odd number (#5534)

* set kernel to odd

* [PPML] Change Occlum tmp_dir  to use hostfs (#5520)

* change_tmp_dir_hostfs，but xgboost example will crash (Need to find the reason).

* add a switch to use tmp hostfs

* [PPML] Implement verifyQuote in QuoteVerifier.scala (#5495)

* Add SGXDCAMQuoteVerifierImpl in for QuoteVerifier
* Add unit test for SGXDCAPQuoteVerifierImpl
* Move attestation.Attestation to dcap.Attestation

* [ORCA] Add xshards example (#5542)

* update sh

* add data example 2

* add data example 2

* fix style

* fix time

* fix time

* fix time

Co-authored-by: yansu <[email protected]>

* add psi in nn tutorial (#5532)

* [PPML] refine eHSN-KMS according to user experience (#5544)

* Add python hint to bigdl.friesian (#5430)

* friesian.feature.table

* script refactor

* doc

* [PPML] Fix XGBoost example in docker-graphene/README.md (#5510)

* Fix the error in docker-graphene/README.md
* Add instructions on how to process Boston_Housing.csv
* Change to use the correct path for xgboost examples

* [ORCA] Add Xshrads tutorial test (#5548)

* add tutorial test

* fix typo

* fix name

* remove shards_regressionExample.py

* update yml

* update yml

* update yml

* update yml

* update yml

* add readme

* update yml

* update yml

Co-authored-by: yansu <[email protected]>

* Change the environment settings in Dockerfile for FL Server. (#5554)

* add assembly

* Enable FL Sever in SGX

* Add start-fl-server.py to Docker Image

* rm ppml-assebly.xml

* Add start-python-fl-server-sgx.sh to Docker Image

* Put start-fl-server.py into assembly

* Improve the Dockerfile to create right environment for FL Server

* Fix the problem of pytorch-nn-lr-tutorial.md

Co-authored-by: Jiaming <[email protected]>

* Reduce XShards tutorial test time (#5555)

* Update README of XShards tutorials (#5557)

* update readme

* minor

* add orca ray python test to github action (#5550)

* add orca ray python test to github action

* update

* update

* update

* update

* update

* update

* [PPML] Remove sgxsdk quote verify in ut (#5553)

* Remove sgxsdk quote verify in ut

* Use Env SGXSDK for UT

* Refine

* [PPML] Refine get RABIT_TRACKER_IP env in XGBoost examples (#5528)

* The original code will lead to keyError if "RABIT_TRACKER_IP" is not
set. The ideal result should be return None.

* Change the Dockerfile for better. (#5559)

* add assembly

* Enable FL Sever in SGX

* Add start-fl-server.py to Docker Image

* rm ppml-assebly.xml

* Add start-python-fl-server-sgx.sh to Docker Image

* Put start-fl-server.py into assembly

* Change the Dockerfile for better

Co-authored-by: Jiaming <[email protected]>

* cicd: add a new workflow called PR_Validation (#5546)

* add PR_Validation workflow

* test

* test

* test

* test

* test

* test

* test

* add friesian ut to PR validation

* revert changes

* add dllib ut

* test

* revert

* [PPML] refine EHSM-KMS and modify annotations (#5563)

* add spark sql examples (#5535)

* add spark sql local mode scripts

* update local ip value

Co-authored-by: baishaojie <[email protected]>

* fix prometheus-client version for ray dashboard (#5549)

* Fix bug that string_embed function Only replace one columns when replace=True. (#5497)

* add for loop to replace all Columns.

* add replace test for string_embds function

* Orca: Add orca ray ctx example to run on self hosted (#5484)

* Add orca ray ctx example in github workflows

* Install cmake 3.16.3 with pip

* Increase the CPU limits

* Add newline at EOF

* Align with the new format

* Add the pull_request trigger

* Add missing property

* Uninstall spark first

* Uninstall spark3

* Remove test triggers

* Add tests to PR_validation

* Fix a bug

* Test the validation trigger

* Undo the change

* Chronos: Add `from_tsdataset` method, BaseTF2Forecaster can input a tsdataset (#5064)

* add from_tsdataset for tfForecaster

* fix known issues

* fix known issues again

* Add attestation guide to README.md in ppml/docker-graphene (#5568)

* Add attestation guide to README.md in ppml/docker-graphene

* Refine

* Refine

* Refine

* Refine

* Refine

* Remove hard coded spark mode in xgboost examples (#5579)

* kms-utils README fix (#5582)

* rename inference ppl test to move to tests-ipex (#5581)

* [PPML] Fix ppml code style (#5584)

* Add BigDL-core dep and scope
* Fix ppml code style

* Chronos : add [how to tune a forecaster model] notebook (#5399)

* add how_to_tune_a_forecaster_model notebook

* modify step1: data preparation

* update based how to train

* modify a bug of summary

* update based on comment

* move to howto

* fix typo

* add file

* update based on comments

* rename the tile

* Fixprocessing for several orca tutorials so it can use the original dataset download from website (#5572)

* [PPML] Modify FTP_URI for sgxdcap quote verifier ut (#5591)

* Modify FTP_URI for sgxdcap quote verifier ut

* Fix

* Fix

* Add shutdown api (#5592)

* feat: add shutdown api

* test: add unit test for shutdown API.

* add orca py37 UT to github action (#5578)

* add orca py37 UT to github action

* update pull_request path

* update build python whl

* update bigdl-core version

* remove pull_request

* remove scala app test for nightly test (#5595)

* Fix yaml load (#5597)

* PPML FL FGBoost save/load server model (#5577)

* remove hardcode credentials (#5598)

* PPML FL protobuf and generated update (#5604)

* PPML FL Pytorch NN tutorial refine (#5545)

* Update powered-by.md

* Update powered-by.md

* optim get schema and get class name in shards into 1 rdd operation (#5573)

* update output file to hdfs path (#5593)

* Chronos: Remove UTs for all `Deprecated` API and `tf1` (#5530)

* delete deprecated UTs

* remove tf1 UTs

* Add spark auth secret env to occlum (#5602)

* Add Azure KMS support for PPML python api (#5547)

* add azure kms for python

* update ppml doc

* update ppml tutorial readme

* update kms-utils entrypoint.sh

* update entrypoint.sh

Co-authored-by: Zhou <[email protected]>

* [Orca] Refactor `model_dir` as an option in tf2 pyspark estimator (#5541)

* refactor model_dir as an option

* modify ut to test non model_dir

* update coding format

* update return results

* add support in load api

* move model_dir from ut

* Pytorch VFL NN refactor, refine and example test (#5607)

* [Documentation] Add Extension nbsphinx-link (#5596)

* Add extension nbsphinx-link: link notebook out of the sphinx root folder to the sphinx project

* Link Notebook custom.ipynb directly from python folder to the sphinx project

* Link Notebook seq_and_func.ipynb directly from python folder to the sphinx project

* Small title fix

* Make interactive graphs visible in readthedocs webpage for seq_and_func.ipynb

* Regenerate outputs for custom.ipynb and remove parts of them

* add five components to tpp (#5614)

Co-authored-by: Jin Hanyu <[email protected]>

* Chronos: change get_latency to a static method (#5618)

* Implement get quote from ehsm (#5621)

* Implement getQuoteFromServer in EHSMAttestationService

* Fix

* Remove Base64 lib

Co-authored-by: xiangyuT <[email protected]>

* Chronos : add regression functions for forecast metrics to replace torchmetrics (#5402)

* add regression functions

* delete unexpected import

* add function api

* remove eval function

* revised the problems mentioned

* Modify files imported TORCHMETRICS_REGRESSION_MAP

* fix bug caused by numpy function

* fix pep8

Co-authored-by: Xinyi Zhang <[email protected]>
Co-authored-by: theaperdeng <[email protected]>

* Fix Friesian READMEs (#5626)

* Chronos: installation panel enhancement (#5588)

* Update:installation panel enhancement
Left a bug to fix and install CMD to revise.

* Bugfix: Fixed a bug when using Firefox browser to use the install guide form.
Fixed the bug that the table's background color may be changed by mistake on Firefox browser.

* Update: update panel as comment required.

* Bugfix: fixed a bug in js file that will show wrong cmd when clicking 'windows' or 'docker'.

* Bugfix: fixed the bug that 'cmd' shows incorrectly when clicking 'prophet' and 'ARIMA'.

* support convert rdd of pandas df to spark df with arrow (#5385)

* Doc: update hadoop document. (#5623)

* doc: update hadoop document.

* fix: fix wording.

* fix: fix wording.

* fix: fix wording.

* Nano: Add pytorch-lightning bf16 training example (#5526)

* rollback requirement-doc

* Add Nano BF16 Training example

* Update

* Update

* Chronos: numpy and python version in pr validation Github Action is fixed (#5613)

* [Nano] Nano How-to Guides: Format & PyTorch Inference (#5480)

* Create doc tree index for Nano How-to Guides

* Add How to guide for PyTorch Inference using ONNXRuntime

* Add How to guide for PyTorch Inference using OpenVINO

* Update How to guide for PyTorch Inference using OpenVINO/ONNXRuntime

* Change current notebook to md and revise contents to be more concentrated

* Add How-to Guide: Install BigDL-Nano in Google Colab (need further update)

* Revise words in How-to Guide for PyTorch Inference using OpenVINO/ONNXRuntime

* Add How-To Guide: Quantize PyTorch Model for Inference using Intel Neural Compressor

* Add How-To Guide: Quantize PyTorch Model for Inference using Post-training Quantization Tools

* Add API doc links and small revision

* Test: syncronization through marks in py files

* Test: syncronization through notebook with cells hidden from rendering in doc

* Remove test commits for runnable example <-> guides synchronization

* Enable rendering notebook from location out of sphinx source root

* Update guide "How to accelerate a PyTorch inference pipeline through OpenVINO" to notebook under python folder

* Update guide "How to quantize your PyTorch model for inference using Intel Neural Compressor" to notebook under python folder

* Fix bug that markdown will be ignored inside html tags for nbconvert, and notebook revise

* Update guide 'How to quantize your PyTorch model for inference using Post-training Optimization Tools' to notebook under python folder

* Small updates to index and current guides

* Revision based on Junwei's comments

* Update how-to guides: How to install BigDL-Nano in Google Colab, and update index page

* Small typo fix

* Fix kms-utils README

* Fix enroll app command in README

* split assembly (#5564)

* split assembly

* update

* update

* [PPML] Refine occlum readme and config (#5625)

* Refine occlum readme and config

* Update docker sql config

* Reduce instance to 1

* [PPML] Add user doc for how to install python dependencies (#5494)

* Add user doc in docker-graphene/README.md
* Add instructions on how to add egg dependencies

* [PPML] Fix file_name too long issue (#5628)

Test xgboost and tpch example successfully.

* [PPML] Refine xgboost docker example config (#5631)

* Chronos : Penalize underestimation example (#5627)

* add example

* remove valid dataset

* fix typo

* modify parameters and graph

* update based on comment

* modify index link

* modify js

* update

* Chronos: Sync SparkXShards changes(TCMFForecaster) (#5630)

* Fix xshards tensorflow (#5633)

* fix

* fix

* fix

* fix

* Chronos: Delete existing tags and replace with new Installation options (#5165)

* remove skipif tf2

* delete skip_onnxrt tags

* fix synatx error

* add installation options

* remove invalid options

* fix known issues

* fix known issues

* rollback tf1 uts

* rollback tf1 UTs

* rollback invalid changes

Co-authored-by: fuckyouNoob <[email protected]>

* Force update bigdl-core jar during build (#5569)

* Add -U in dllib release
* Add -U to orca and friesian

* Chronos: make `roll=True` the default value for `to_torch_data_loader` (#5605)

* Chronos: modify examples of `.evaluate` (#5622)

* fix nano UT (#5650)

* [PPML]Remove simple KMS entroll command (#5624)

* fix: simple enroll

* Update DeepRec README.md (#5652)

* fix dllib pom scope and typo in examples (#5575)

* fix dlliv typo in examples

* [PPML] Fix bash expected unary operator (#5653)

* [PPML] Implement bi-attestation in AttestationCLI.scala (#5648)

* Implement bi-attestation in AttestationCLI.scala

* Refine

* Refine

* Refine

* Refine

* Fix problems according to comments

Co-authored-by: xiangyuT <[email protected]>

* PPML FL change clientID from String to Int (#5647)

* support convert spark df to shards with arrow (#5558)

* Chronos: syntax error in Evaluator API documentation is fixed (#5660)

* Chronos: how to create a forecaster (#5172)

* how to guide from_tsdataset

* improve md

* remove redundant message

* fix known issues

* add rst

* move create-forecaster to new line

* fix known issue

* fix syntax error

* fix syntax error again

* add open-colab icon

* fix known issues

* fix some words

* fix typo

* fix syntax error

* add some update

Co-authored-by: theaperdeng <[email protected]>

* Nano : ResNet Demo for InferenceOptmizer (#5580)

* add resnet demo

* add basic readme

* add inference result

* update based on comment

* update based on comment

* fix style

* fix typos and update based on comment

* update numpy version

* update for faster demo

* modify some number

* [PPML] Add SGX plugin device readme (#5663)

* add sgx plugin device readme

* fix tutorial xshards env (#5661)

* fix tutorial xshards env

* add protobuf

* add torch

* add pyarrow

* add python requirements

* Nano : fix and enhancement of InferenceOptimizer (#5611)

* fix accuracy-related bug and add model.eval()

* automatically print optimization results

* dynamic control latency_sample_num

* add ut for no optimize

* fix accuracy

* update ut

* update based on comment

* remove statue restore

* Nano: Update Nano PyTorch Lightning tutorial test script (#5612)

* Update

* Add test for lightning bf16

* Update

* Fix shell

* remove redundant code in resnet18 example (#5665)

* support init_orca_context with spark.master=local[*, F]/local[N, F] (#5651)

* support format local[N,F] & local[*,F]

* add comment and UT

Co-authored-by: Zhou <[email protected]>

* Chronos: how to speedup inference on one node (onnx, openvino) (#5556)

* how to speedup inference on one node

* index added

* fixed

* fixed

* split to 2 guides

* add build_onnx and build_openvino

* add note border

* fix

* fix colab conflict

Co-authored-by: binbin <[email protected]>

* Nano: Add nano pytorch example (#5570)

* rollback requirement-doc

* Add example

* Update

* Update

* Update

* Update

* Add comments and remove testing loop

* Add comments about linear scale and warmup

* remove .keep file

* add create-job-status-badge action (#5676)

* [Nano] add __call__ method for OpenVINOModel (#5540)

* [Nano] support __call__ method for OpenVINOModel

* remove unnecessary kwargs in __call__ method of OpenVINOModel

* specify which __call__ method to call in KerasOpenVINOModel

* remove whitespace

* make KerasOpenVINOModel and PytorchOpenVINOModel not inherit from OpenVINOModel

* fix docstring of OpenVINOModel._save_model

* remove extra import

* fix _save_model

* change_save_model

* simplify _model_exists_or_error

* Support decimal for Spark DataFrame (#5671)

* support decimal

* remove

* Fix yaml load (#5655)

* [PPML] Fix EHSM 0.3.0 create enclave failure (#5683)

Co-authored-by: glorysdj <[email protected]>

* fix issue 4642, fix DBFS file path problem on Dataricks (#5679)

* fix issue 4642

* parse model_dir

Co-authored-by: Zhou <[email protected]>

* Change Analytics Zoo related to BigDL in doc (#5685)

* change az to bigdl

* minor

* minor

* Add Ray arguments in init_orca_context to Doc page (#5686)

* add ray docs

* fix

* fix

* fix style

* minor

* scala lightGBM classifier and regressor[WIP] (#5447)

* scala lightGBM classifier and regressor

* Fix Orca Example styles (#5692)

* part1

* part2

* part3

* part4

* exclude and finish

* Chronos: fix spark 3.1 bug in xshards unscale (#5689)

* Add selfHostedRunner input (#5701)

* add create-job-status-badge action

* add selfHostedRunner input

* fix: update redis port random range. (#5702)

* [Nano] Add Github Action Tests for How-To Guides: Inference PyTorch (#5668)

* Disable other nano action tests temporarily

* Add github action tests for Nano How-To Guides: Inference > PyTorch

* Add dependency install for pytest and nbmake

* Separate tests based on openvino/onnx dependencies

* Tighten the scope for sed to change

* Fix [AttributeError: 'OutStream' object has no attribute 'watch_fd_thread'] when testing for OpenVINO related notebook
Downgrade ipykernal to solve this

* Edit trigger conditions for how-to gudies tests

* Enable other nano tests again

* Style fix: remove extra tabs and add missing comments

* Add how-to guides tests trigger limitations for push on main branch

* fix integration test for dllib examples (#5707)

* Chronos: train tcn model on gpu and speed up inference on cpu (#5594)

* add nano_gpu

* simplify the code

* simplify the code

* modify the code

* add some updates

* add document

Co-authored-by: theaperdeng <[email protected]>

* bigdl all in one jar (#5703)

* bigdl all in one jar

* update

* cicd: scan dependency tree to help debug if fossa scan failed (#5698)

* scan dependency

* if always

* update

* filter dependency tree if failure

* revert

* [PPML] EHSM 0.3.0 AS Support for Gramine (#5644)

* [PPML]correct the command and add explanation in kms-utils README (#5664)

* fix command argument in README

* explain file structure

* typo

* diff between file and directory

* typo

* commeng location

* make comment and variable understandable

* fix issue-702 (#5708)

* Change the environment of container and fix the problem of cannot compare two variables. (#5620)

* add assembly

* Enable FL Sever in SGX

* Add start-fl-server.py to Docker Image

* rm ppml-assebly.xml

* Add start-python-fl-server-sgx.sh to Docker Image

* Put start-fl-server.py into assembly

* Change the environment of container and fix the problem of cannot compare two variables

* Change the location of command "rm protobuf" in Dockerfile

* Add explicit cast to avoid thread being syspended.

* Change docker-gramine/Dockerfile to fit FL's environment requirements.

Co-authored-by: Jiaming <[email protected]>

* Chronos: PR validation-spark3.1-ray job to Github Action (#5681)

* pytest ray-part1

* pytest ray-part1+part2

Co-authored-by: binbin <[email protected]>

* Add Friesian README (#5709)

* Create README.md

* Update README.md

* Update README.md

* Add create dynamic badge job (#5706)

* add create-job-status-badge action

* add selfHostedRunner input

* add create badge job

* change isSelfHostedRunner to is-self-hosted-runner

* Nano : migrate trace and quantize from Trainer to InferenceOptimizer (#5667)

* basic migration

* add load_xxx_model

* modify init

* Chronos: install openvino-dev in Github action (#5704)

* install openvino

* fix

* fix

* numpy==1.19.5

Co-authored-by: binbin <[email protected]>

* Chronos: Fix `LazyImport` known issue (#5502)

* fix known issues

* fix known isses

* Add nano tensorflow examples (#5463)

* add tensorflow multi instance training
* add tensorflow sparse embedding example

* Chronos: Add support for `id_sensitive`=True to Forecaster.from_tsdataset (#5551)

* supports id_sensitive=True

* new params is_predict

* rollback is_predict

* fix known issues

* fix code style

* Chronos: how to guide page cleaning (#5657)

* update

* add nblink

* windows guide fix

* add some updated

* update chronos

* add update image

* add new image

* add updates

* add update

* add new image

* fix typo

* fix notebook location

* add new index

* update

* fix some doc

* update tree

* fix typo

* Fix the problem of indents. (#5714)

* add assembly

* Enable FL Sever in SGX

* Add start-fl-server.py to Docker Image

* rm ppml-assebly.xml

* Add start-python-fl-server-sgx.sh to Docker Image

* Put start-fl-server.py into assembly

* Fix the problem of indents.

Co-authored-by: Jiaming <[email protected]>

* Change the editions of torch and torchvision. (#5717)

* add assembly

* Enable FL Sever in SGX

* Add start-fl-server.py to Docker Image

* rm ppml-assebly.xml

* Add start-python-fl-server-sgx.sh to Docker Image

* Put start-fl-server.py into assembly

* Change the editions of torch and torchvision

Co-authored-by: Jiaming <[email protected]>

* Pentest Issue: remove hardcode credentials (#5649)

* remove hardcode credentials

* update

* add orca ut to PR_validation.yml

* use redis_paasword in extra_params otherwise use the default password in ray

* refine code

* update

* typo

* remove orca ut from pr validation

* update

* update

* Modify two errors in create-job-badge and license-scan workflow. (#5718)

* add create-job-status-badge action

* add selfHostedRunner input

* add create badge job

* change isSelfHostedRunner to is-self-hosted-runner

* update create-job-status-badge

* adjust indent

* Update create aks script on Graphene (#5566)

* update create aks

* update

* update

* fix create sp

* fix

* make executable for az scripts

* install command

Co-authored-by: root <root@jiao-test.rfprax1kp2xefkkygl2c02qm5g.cx.internal.cloudapp.net>

* Add long descriptions to pypi releases (#5711)

* long desc

* style

* meet comment

* Update PR_validation.yml (#5722)

* add orca horovod tf2 test to github actions (#5601)

* add orca horovod tf2 test to github actions

* update pull_request

* update

* add keras

* update python version

* update horovod

* update cmake

* install bigdl-orca-spark3

* update

* update mxnet

* update

* update numpy

* update

* update ray version

* unintsall intel-tensorflow

* add conda env

* install horovod

* remove conda env

* install bigdl-orca-spark3

* split conda env

* source conda

* split conda env

* update

* update env

* remove env

* update

* update

* uninstall requirements

* update

* update install whl

* update

* add remove env

* install bigdl-orca-spark3

* update

* Add conditional judgment in scala-style-check and python-style-check (#5721)

* add create-job-status-badge action

* add selfHostedRunner input

* add create badge job

* change isSelfHostedRunner to is-self-hosted-runner

* update create-job-status-badge

* adjust indent

* update python-style-check and scala-style-check

* Update scala-style-check.yml

* Update python-style-check.yml

* [PPML] Initiate README.md for AttestationCLI (#5688)

* Init

* Refine

* Refine

* Refine according to comments

* Chronos: install openvino in Chronos-PRVN-Spark3.1-ray check (#5719)

Co-authored-by: binbin <[email protected]>

* Chronos: PR validation-spark3.1-onnxrt job to Github Action (#5725)

Co-authored-by: binbin <[email protected]>

* Chronos: test onnxrt==1.11.1 in PR validation-spark2.4-onnxrt job (#5677)

* onnxrt==1.11.1

* fix

Co-authored-by: binbin <[email protected]>

* [PPML] change KMS appkey to apikey (#5658)

* change appkey to apikey

* change APiKEY to APIKEY

Co-authored-by: Heyang Sun <[email protected]>

* [PPML]delete unused argument in kms-utils README(#5733)

* [PPML] Fix format error of quote from attestation service (#5732)

* Fix format error of quote fom attestatioon service

* Refine

* Refine

* skip dummy verify

Co-authored-by: xiangyuT <[email protected]>

* release fat jars (#5736)

* release fat jars

* format

* [DLlib] GBT CriteoClickLogsDataset example (#5723)

* init gbt class

* remove something unimportant

* add readme

* change xgb to gbt

* use overwrite to save

* add text to fix message=Header does not match expected text line=1

* Chronos: 'forecaster.predict_with_openvino' supports quantization API (#5690)

* add openvino quantization

* add some comments

* fix code style

* update assembly pom (#5737)

Co-authored-by: Zhou <[email protected]>

* Add more data types in convert DataFrame to numpy (#5680)

* add more datatype

* update unit test

* update ut in test_estimator_pyspark_backend

* update ut in test_estimator_pyspark_backend

* update ut in test_estimator_ray_backend

* update ut in test_estimator_ray_backend

* add array decimal type

* update array data type

Co-authored-by: Zhou <[email protected]>

* copy config (#5731)

* Nano : Enhancement for output format of InferenceOptimizer (#5705)

* first commit

* improve output of optimize

* fix method_type for method lack of dependency

* update openvino model for thread num

* add thread num for trace and quantize

* update based on comment: modify output, add progress bar and remove method type

* modify latency to latency(ms)

* add thread_num for Trainer.trace and Trainer.quantize

* fix bug of openvino cpu_num

* [PPML]doc: change appkey to apikey in kms README (#5747)

* cicd: add debug info to license-scan workflow (#5739)

* add debug info

* debug

* echo

* update

* update

* Add nightly-test job badge (#5750)

* add create-job-status-badge action

* add selfHostedRunner input

* add create badge job

* change isSelfHostedRunner to is-self-hosted-runner

* update create-job-status-badge

* adjust indent

* update python-style-check and scala-style-check

* Update scala-style-check.yml

* Update python-style-check.yml

* Update nightly_test.yml

* refactor assmbly deploy (#5753)

* Fix702 (#5727)

add lightgbm scope

* [PPML] Implement VerificationCLI to verify Attestation Service (#5742)

* Implement VerificationCLI and a bash to use VerificationCLI

* Refine

Co-authored-by: xiangyuT <[email protected]>

* Add ipython extension for rendering code blocks in excuted notebooks properly in our readthedocs project (#5757)

* [Orca] Refacor `model_dir` as optional in pytorch pyspark estimator (#5738)

* refactor model_dir as optional in pytorch estimator

* update ut to test non model_dir

* support standard scaler for shards (#5716)

* support standard scaler

* support param map for lightGBM (#5712)

* Support load state dict in TorchNano (#5687)

* support load state dict in TorchNano
* fix UT

* add http prometheus client (#5743)

* [PPML] Add occlum gbt readme and fix file path (#5756)

* change path examples to example

* add run_spark_gbt_criteo.sh

* update readme and timeout config

* some improvement (#5765)

* add conda env to orca test actions (#5735)

* add conda env to orca test actions

* add pull_request

* update env

* update

* update

* update

* update

* update

* update cmake

* update ut

* update ut

* update requirements horovod pytorch

* update

* update

* update protobuf

* update horovod test

* add tensorflow

* update tensorflow

* update

* update python exampletet

* update python UT

* update

* update

* update

* [PPML] Remove XGBoost from PPML guide

* Nano : reduce time cost for InferenceOptimizer and update demo (#5740)

* update readme and reduce time cost for calculating accuracy

* add prune type

* filter warnings

* add check for input_sample

* update based on comment

* update readme and add ut

* update input_sample

* delete redundant lines

* add forward_args

* Chronos: add conda env to Chronos PRVN Actions (#5744)

* [PPML] Fix gbt example spark config error (#5774)

* Fix the conflict of `KMP_AFFINITY` and onnxruntime  (#5764)

* remove `compact` option from KMP_AFFINITY's default value

* [PPML] Fix tracker bind issue happens in xgboost examples with SGX enabled (#5766)

* Change tracker.py to acquire IP automatically

* Remove the dependencies in documents on RABIT_TRACKER_IP

* Set xgboost.spark.ignoreSsl to True in xgboost examples

* Add deprecate hint for xgboost examples

* [PPML]Add log file argument to bigdl-ppml-submit.sh (#5726)

* add log file argument

* change demo for log argument

* Orca OpenVINO estimator add input order param & dataframe input support multi-output (#5471)

* update

* df support multi-output

* temp

* update

* update test

* meet comments

* meet comments

* del pred

* update testcase

* [Nano] How-To Guides: Training - PyTorch Lightning (#5643)

* Rearrange file structure for PyTorch Inference for docs and add titles for PyTorch-Lightning Training

* Add How-to guide: How to accelerate a PyTorch-Lightning application on training workloads through Intel® Extension for PyTorch*

* Add how-to guide: How to accelerate a PyTorch-Lightning application on training workloads through multiple instances

* Revise: remove '-' in 'PyTorch-Lightning' and some other changes

* Add How-to guides: How to use the channels last memory format in your PyTorch Lightning application for training

* Add how-to guide: Use BFloat16 Mixed Precision for PyTorch Lightning Training

* Add How-to guide: How to accelerate a computer vision data processing pipeline

* Small Revision: change comments in several code cells

* Disable other nano tests temporarily

* Add github action tests for Nano Training PyTorch Lightning tests

* Enable other nano tests again

* Small revisions: typos and explanation texts changes

* Revise: update based on comments

* Chronos: fix `quantize` and `to_torch_data_loader` API doc (#5755)

* Add region proxy for create-job-badge action (#5761)

* add create-job-status-badge action

* add selfHostedRunner input

* add create badge job

* change isSelfHostedRunner to is-self-hosted-runner

* update create-job-status-badge

* adjust indent

* update python-style-check and scala-style-check

* update

* Update scala-style-check.yml

* Update python-style-check.yml

* add nightly-test job badge

* Update nightly_test.yml

* Add region proxy

* Chronos: fix install cmd in Chronos User Guide document (#5776)

* PPML: Initiate doc for verificationCLI (#5770)

* Initiate doc for verificationCLI and refine

* Update README.md

Co-authored-by: xiangyuT <[email protected]>

* PPML: mod TPCH document (#5583)

* doc: modify markdown grammar typo

* doc: md typo

* typo

* fix

* fix

* fix

* hint

* correct argument

* add path of password to container

* fix syntax errors

* fix

* fix

* [Nano] Update Trainer -> InferenceOptimizer for Related How-to Guides (#5778)

* Update Trainer to InferenOptimizer for related how-to guides

* Disable other nano tests temporarily

* Enable other nano tests again

* tdx/scripts (#5636)

* Fix runnerHostedOn input (#5784)

* add create-job-status-badge action

* add selfHostedRunner input

* add create badge job

* change isSelfHostedRunner to is-self-hosted-runner

* update create-job-status-badge

* adjust indent

* update python-style-check and scala-style-check

* update

* Update scala-style-check.yml

* Update python-style-check.yml

* add nightly-test job badge

* Update nightly_test.yml

* Add region proxy

* fix runnerHostedOn input

* tdx/docker/bigdl-tdx (#5637)

* tdx/docker/bigdl-tdx

* address comment

* Lightgbmpython (#5696)

Port scala lightgbm to python

* [Orca] Support save model weights in tf2 ray estimator (#5780)

* add save load weights func

* hot fix pyspark bug

* add ut

* code style fix

* Nano : add API for InferenceOptimizer and deprecated some Trainer APIs (#5768)

* add api and deprecated

* add license

* add deprecated

* update comment for api display

* modify comment

* update based on comment

* [Nano] Update Trainer -> InferenceOptimizer for Related Examples (#5781)

* Update Trainer to InferenceOptimizer for related examples

* Diasble unrelated nano tests

* Enable unrelated nano tests again

* Doc: add ray port FAQ to ray overview document. (#5752)

* feat: add faq to ray overview doc.

* fix: fix doc style.

* fix: fix typo.

* feat: add ray redis and dashboard port conflict to faq.

* fix: fix redis port param name.

* fix: fix redis port param name.

* fix: fix typo

* fix: fix typo

* fix: fix wording.

* tdx/docker/client-image (#5639)

* Add Friesian multi task example code and readme (#5460)

* add multi task example codes and readme

* fix for Friesian code style

* part 1: fix comments in pr

* update for comments part 2

* update for pr comments part 3

* update for code style

* update codes and add test results

* Update README.md

* Add Nano openvino async api (#5615)

* add openvino async_predict api

* add unit test for async_predict api

* fix codestyle error

* optimize input/output format and doc string

* change para name, docstring & add type hint

* fix error when calling on_forward_end after the output format of __call__ in OpenVINOModel is changed

* fix codestyle check error & disable mypy type check

* fix codestyle check error

* use model_exist_or_error

* Fix orca.pandas.read_csv() only return top 10k rows issue (#5775)

* bug fix

* add ut

* add test file (#5788)

* update pod template (#5786)

* Add nano pytorch training bf16 example (#5600)

* rollback requirement-doc

* Add Nano PyTorch BF16 Example

* Add comments and remove testing loop

* Update

* Nano: Add tensorflow quantization example. (#5619)

* Nano: Add tensorflow quantization example.

* simplify quantize arguments

* add some extra comments

* delete concrete numbers

* change dataset to cifar10

* change file name to cifar10

* improve code organization

* remove unnecessary comments

* Chronos: how to evaluate using forecaster (#5710)

* [PPML] Change E2E XGB example to Spark GBT (#5785)

* change to xgb to gbt

* use overwrite to save

* Update multi-task example (#5787)

* update multi-task

* fix

* minor

* minor

* [PPML] Fix BigDL Graphene Azure scripts (#5767)

* update

* update submit scripts

* Chronos: fix input feature num != output feature num case for autoformer (#5673)

* fix input feature num != output feature num case

* add updates

* Lightgbm (#5789)

* error message

* update Databricks user guide (#5779)

* update databricks doc

* update databricks doc

* update databricks doc

* update databricks doc

* update databricks doc

* update databricks doc

Co-authored-by: Zhou <[email protected]>

* [PPML] Update end to end GBT example readme (#5792)

* update end to end gbt readme

* update header location

* add bigdl-ppml jar with denpendency jar in tdx docker (#5793)

* Fix PanTest issue（partly） -- ObjectInputStream's readObject method may deserialize untrusted data (#5666)

* fix readObject deserialize untrusted data

* use classTag[T] and use classof[modue]

* remove double init inputStream

* add accept pattern

* accept Array

* add EncodeUtils ut

* add success case and refine fail case

* add headers

* Add warning for Distributed XGBoost examples (#5795)

* tdx e2e readme (#5640)

* update graphene ppml examples to main (#5804)

* update graphene ppml examples

* update graphene ppml examples

Co-authored-by: Jin Hanyu <[email protected]>

* Fix a bug of readthedocs about get_public_dataset (#5808)

* Chronos: fix ZooTestCase in tensorflow unit tests (#5800)

* Chronos: decouple mtnet forecaster with orca (#5815)

* update mtnet model to decouple with orca

* rename one of the method

* update test-suites scripts (#5823)

Co-authored-by: Jin Hanyu <[email protected]>

* update tpp blas component information (#5825)

Co-authored-by: Jin Hanyu <[email protected]>

* Chronos : support confidence interval for forecaster (#5682)

* first commit, add predict_interval

* add return value of calculate

* modify parameter name, only calculate data noise once

* add ut for lstm, nbeats, s2s, tcn

* add paper link, change evaluate to predict

* modify data noise

* add ut for loader c and change to mean_yhat

* support confidence interval for autoformer

* update ppml examples scripts (#5827)

Co-authored-by: Jin Hanyu <[email protected]>

* Chronos/Nano: update nano and chronos action trigger domain (#5809)

* update nano and chronos action trigger domain

* update

* delete orca.learn as a trigger

* Support tf2.1 load model for ray backend (#5830)

* support tf2.1

* meet review

* Chronos: More autoformer bug fix and enhancement (#5741)

* midterm push for working in cafe:)

* add updates

* remove confusing comments

* consider the conflict between tsdataset.label_len and label_len

* update according to comments, fix pep8

* add test cmt

Co-authored-by: Jin Hanyu <[email protected]>
Co-authored-by: Jiaming <[email protected]>
Co-authored-by: Mingzhi Hu <[email protected]>
Co-authored-by: Zhentao Chen <[email protected]>
Co-authored-by: Cengguang Zhang <[email protected]>
Co-authored-by: Juntao_Luo <[email protected]>
Co-authored-by: binbin Deng <[email protected]>
Co-authored-by: dding3 <[email protected]>
Co-authored-by: SONG Ge <[email protected]>
Co-authored-by: Shaojun Liu <[email protected]>
Co-authored-by: Nancy <[email protected]>
Co-authored-by: yansu <[email protected]>
Co-authored-by: Guancheng Fu <[email protected]>
Co-authored-by: ZehuaCao <[email protected]>
Co-authored-by: Ruonan Wang <[email protected]>
Co-authored-by: Shaojie Cui <[email protected]>
Co-authored-by: Wang Jian <[email protected]>
Co-authored-by: Xiangyu Tian <[email protected]>
Co-authored-by: Heyang Sun <[email protected]>
Co-authored-by: Zhao Changmin <[email protected]>
Co-authored-by: Kai Huang <[email protected]>
Co-authored-by: pinggao187 <[email protected]>
Co-authored-by: shaojie <[email protected]>
Co-authored-by: baishaojie <[email protected]>
Co-authored-by: Shan Yu <[email protected]>
Co-authored-by: Aixi Deng <[email protected]>
Co-authored-by: liangs6212 <[email protected]>
Co-authored-by: Qiyuan Gong <[email protected]>
Co-authored-by: Jason Dai <[email protected]>
Co-authored-by: Jiao Wang <[email protected]>
Co-authored-by: Jian Zhou <[email protected]>
Co-authored-by: Zhou <[email protected]>
Co-authored-by: Yuwen Hu <[email protected]>
Co-authored-by: Jin Hanyu <[email protected]>
Co-authored-by: Junwei Deng <[email protected]>
Co-authored-by: xiangyuT <[email protected]>
Co-authored-by: Chaselzxy <[email protected]>
Co-authored-by: Xinyi Zhang <[email protected]>
Co-authored-by: theaperdeng <[email protected]>
Co-authored-by: Le-Zheng <[email protected]>
Co-authored-by: fuckyouNoob <[email protected]>
Co-authored-by: Yishuo Wang <[email protected]>
Co-authored-by: Guoqiong Song <[email protected]>
Co-authored-by: binbin <[email protected]>
Co-authored-by: Hu, Zhaojie <[email protected]>
Co-authored-by: glorysdj <[email protected]>
Co-authored-by: David smurf <[email protected]>
Co-authored-by: root <root@jiao-test.rfprax1kp2xefkkygl2c02qm5g.cx.internal.cloudapp.net>
Co-authored-by: Yina Chen <[email protected]>
Co-authored-by: WangBin <[email protected]>
Co-authored-by: mycprotein <[email protected]>

#5605)